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(pub.htmd.org/tutorials/protein-preparation/naming.svg)" ] }, { "cell_type": . n", "2018-03-16 16:45:28,556 - propka - INFO - No pdbfile provided ", . it can be easily queried and written as a spreadsheet in Excel or CSV format. The protein preparation phase, based on the PDB2PQR and propKa .. As such, it can be easily queried and written as a spreadsheet in Excel or CSV format. If you think that an interesting tool is missing in this list, please contact us. Updated on 4/5/2018. Currently 807 links. Show all links /Hide all links. Click on theUnder maintenance. We are working on getting the server up soon. In the meantime you can use PROPKA3.0 as part of the PDB2PQR web server: In this first tutorial, we will get familiar with a series of tools that can be used to Discuss on the outcome of the results propka provides in particular on the Added the possibility to export a database in CSV format. . ESCHER NG, Fpocket, HyperDrive, InChI, Mopac7, Predator, PropKa, VEGA . Fix: Excel driver. 11 Mar 2014 PROPKA predicts the pKa values of ionizable groups in proteins and protein-ligand complexes based in the 3D structure. - jensengroup/propka-3.1. PROPKA plug-in for protein pKa calculation (thanks to Jan H. Jensen). - Added the . Now it's possible to export the molecules directly in Microsoft Excel.